R function a day: October 2017

Tuesday, October 24, 2017

unique() {base}

unique() function is a generic function that extracts unique values from a vector, array or data frame.

The parameters of the function are:

-x: vector, array or data frame to remove duplicated values

-fromLast: logical indicating if duplication should be considered from the last

#`unique()` function using vectors:
x = c(10 + 0:5, 1:5, 8:1)
x

##  [1] 10 11 12 13 14 15  1  2  3  4  5  8  7  6  5  4  3  2  1

u1 = unique(x)
u1

##  [1] 10 11 12 13 14 15  1  2  3  4  5  8  7  6

u2 = unique(x,  fromLast = TRUE) # different order
u2

##  [1] 10 11 12 13 14 15  8  7  6  5  4  3  2  1

y = c(5:1,8:1, 10, 1:3)
y

##  [1]  5  4  3  2  1  8  7  6  5  4  3  2  1 10  1  2  3

u3 = unique(y)
u3

## [1]  5  4  3  2  1  8  7  6 10

u4 = unique(y,  fromLast = TRUE) # different order
u4

## [1]  8  7  6  5  4 10  1  2  3

#`unique()` function with data frames:
dim(iris)

## [1] 150   5

nrow(unique(iris))

## [1] 149

unique(iris$Sepal.Width)

##  [1] 3.5 3.0 3.2 3.1 3.6 3.9 3.4 2.9 3.7 4.0 4.4 3.8 3.3 4.1 4.2 2.3 2.8
## [18] 2.4 2.7 2.0 2.2 2.5 2.6

length(unique(iris$Sepal.Width))

## [1] 23

par(mfrow = c(1,2))
plot(iris$Sepal.Length, col = 'darkturquoise',type = 'b', frame.plot = F)
plot(unique(iris$Sepal.Length), col = 'darkviolet',type='b', frame.plot = F)

Saturday, October 14, 2017

var() {base}

var() function that computes the variation of the values in x.

var(x, y = NULL, na.rm = FALSE)

The arguments are:

x: numeric vector
y:NULL (default) or a vector, matrix or data frame with compatible dimensions to x.
na.rm: logical value indicating whether NA values should be removed before the computation proceeds.

Formula to calculate the Standard Deviation:

σ=∑(xi−x¯)2n−1

The variance of a data set measures the mathematical dispersion of the data relative to the mean. However, this value is difficult to apply in a real-world sense because the values used to calculate it were squared.

The standard deviation, as the square root of the variance gives a value that is in the same units as the original values, which makes it much easier to work with and to interpret. (https://rfunctionaday.blogspot.com.es/2017/10/sd-base.html)

x:

x = c(1,6,10,23,4,5,56)
var1 = sum((x - mean(x))^2)/(length(x)-1)
var2 = var(x)
var1 ; var2 #same result

## [1] 378

## [1] 378

y:

var(1:10); var(1:10,1:10) #same result

## [1] 9.166667

## [1] 9.166667

y = c(10,45,10,3,24,54,5)
var1 = var(x); var3 = var(y)
var4 = var(x,y)
var1 ; var3 ; var4

## [1] 378

## [1] 415.619

## [1] -195

na.rm:

z = c(1,6,10,23,NA, NA, 4,5,56, 56, NA)
var3 = sum((z - mean(z))^2)/(length(z)-1)
var4 = var(z)
var5 = var(z, na.rm = TRUE) #remove NA values to compute var
var3 ; var4 ; var5

## [1] NA

## [1] NA

## [1] 534.125

summary(iris)

##   Sepal.Length    Sepal.Width     Petal.Length    Petal.Width   
##  Min.   :4.300   Min.   :2.000   Min.   :1.000   Min.   :0.100  
##  1st Qu.:5.100   1st Qu.:2.800   1st Qu.:1.600   1st Qu.:0.300  
##  Median :5.800   Median :3.000   Median :4.350   Median :1.300  
##  Mean   :5.843   Mean   :3.057   Mean   :3.758   Mean   :1.199  
##  3rd Qu.:6.400   3rd Qu.:3.300   3rd Qu.:5.100   3rd Qu.:1.800  
##  Max.   :7.900   Max.   :4.400   Max.   :6.900   Max.   :2.500  
##        Species  
##  setosa    :50  
##  versicolor:50  
##  virginica :50  
##                 
##                 
##

meanset = mean(iris$Sepal.Length[iris$Species=='setosa'])
meanversi = mean(iris$Sepal.Length[iris$Species=='versicolor'])
meanvir = mean(iris$Sepal.Length[iris$Species=='virginica'])

sdset = sd(iris$Sepal.Length[iris$Species=='setosa'])
sdversi = sd(iris$Sepal.Length[iris$Species=='versicolor'])
sdvir = sd(iris$Sepal.Length[iris$Species=='virginica'])

varset = var(iris$Sepal.Length[iris$Species=='setosa'])
varversi = var(iris$Sepal.Length[iris$Species=='versicolor'])
varvir = var(iris$Sepal.Length[iris$Species=='virginica'])

plot(iris$Species, iris$Sepal.Length, col = 'thistle1', main = 'SD/Var')
#SD segments
segments(1, meanset+sdset,1, meanset-sdset, col = 'deeppink', lwd = 5)
segments(2, meanversi+ sdversi, 2, meanversi-sdversi, col = 'deeppink', lwd = 5)
segments(3, meanvir + sdvir, 3, meanvir-sdvir, col = 'deeppink',lwd = 5)
#var segments
segments(1, meanset+varset,1, meanset-varset, col = 'darkviolet', lwd = 5)
segments(2, meanversi+ varversi, 2, meanversi-varversi, col = 'darkviolet', lwd = 5)
segments(3, meanvir + varvir, 3, meanvir-varvir, col = 'darkviolet',lwd = 5)

Monday, October 9, 2017

sd() {base}

sd() function that computes the standard deviation of the values in x.

sd(x, na.rm = FALSE)

The arguments are:

x: numeric vector
na.rm: logical value indicating whether NA values should be removed before the computation proceeds.

Formula to calculate the Standard Deviation:

σ=∑(xi−x¯)2n−1−−−−−−−−−−√

SD quantifies how much the members of a group differ from the mean value for the group.

x = c(1,6,10,23,4,5,56)
sd1 = sqrt(sum((x - mean(x))^2)/(length(x)-1))
sd2 = sd(x)
sd1 ; sd2 #same result

## [1] 19.44222

## [1] 19.44222

na.rm:

y = c(1,6,10,23,NA, NA, 4,5,56, 56, NA)
sd3 = sqrt(sum((y - mean(y))^2)/(length(y)-1))
sd4 = sd(y)
sd5 = sd(y, na.rm = TRUE) #remove NA values to compute the SD
sd3 ; sd4 ; sd5

## [1] NA

## [1] NA

## [1] 23.11114

summary(iris)

##   Sepal.Length    Sepal.Width     Petal.Length    Petal.Width   
##  Min.   :4.300   Min.   :2.000   Min.   :1.000   Min.   :0.100  
##  1st Qu.:5.100   1st Qu.:2.800   1st Qu.:1.600   1st Qu.:0.300  
##  Median :5.800   Median :3.000   Median :4.350   Median :1.300  
##  Mean   :5.843   Mean   :3.057   Mean   :3.758   Mean   :1.199  
##  3rd Qu.:6.400   3rd Qu.:3.300   3rd Qu.:5.100   3rd Qu.:1.800  
##  Max.   :7.900   Max.   :4.400   Max.   :6.900   Max.   :2.500  
##        Species  
##  setosa    :50  
##  versicolor:50  
##  virginica :50  
##                 
##                 
##

meanset = mean(iris$Sepal.Length[iris$Species=='setosa'])
meanversi = mean(iris$Sepal.Length[iris$Species=='versicolor'])
meanvir = mean(iris$Sepal.Length[iris$Species=='virginica'])

sdset = sd(iris$Sepal.Length[iris$Species=='setosa'])
sdversi = sd(iris$Sepal.Length[iris$Species=='versicolor'])
sdvir = sd(iris$Sepal.Length[iris$Species=='virginica'])

plot(iris$Species, iris$Sepal.Length, col = 'lightblue', main = 'SD as a measure of spread')
segments(1, meanset+sdset,1, meanset-sdset, col = 'deeppink', lwd = 5)
segments(2, meanversi+ sdversi, 2, meanversi-sdversi, col = 'deeppink', lwd = 5)
segments(3, meanvir + sdvir/2, 3, meanvir-sdvir/2, col = 'deeppink',lwd = 5)

R function a day